Welcome to the Documentation of the SemanticST Project!

Explore how SemanticST can help with your spatial transcriptomics analysis.

SemanticST: Spatially informed semantic graph learning for effective clustering, integration, and scalable analysis of spatial transcriptomics with minibatch training

• Installation
• Tutorial 1: DLPFC Data Analysis (10X Visium)
• Tutorial 2: Mouse Brain Analysis (10X Visium)
• Tutorial 3: Mouse Brain Analysis (Slideseq)
• Tutorial 4: Mouse Olfactory Bulb (Stereo-seq)
• Tutorial 5: Mouse Brain Analysis (Stereo-seq)
• Tutorial 6: Human Breast Cancer Analysis (10X Visium)
• Tutorial 7: Human Breast Cancer Analysis (Xenium)
• Tutorial 8: Horizontal Integration
• Tutorial 9: Vertical Integration